Program
Joint
8th European Lipidomics Meeting
6th Lipidomics Forum
Online-Meeting cohosted by iLS
29th September – 2nd October 2020, Regensburg, Germany
Preliminary Program
Times in the following schedule are given in Central European Summer Time (CEST) for Berlin, Germany.
Tuesday, 29th September
Time | Session | Speaker |
09:00 – 9:05 | Welcome | |
09:05 – 9:50 | Opening lecture: Challenges and opportunities of big data oxylipidomics: mapping out their endogenous fate in macrophages. | Valerie O’Donnell, Cardiff University, UK |
Young scientists I selected short presentations (15 min + 5 discussion min) | ||
9:50 – 10:10 | How accurate is my lipid quantification? Insights into internal standardization by uncertainty calculation | Harald Schoeny, Vienna, Austria |
10:10 – 10:30 | Calibration with a long-term reference matched against SRM-1950 improves the robustness of lipidomics measurements in plasma | Bohdan Babiy, Madrid, Spain |
10:30 – 10:50 | Development of flow injection mass spectrometry-based platform for screening of blood plasma samples | Jakub Idkowiak, Pardubice, Czech Republic |
10:50 – 11:10 | Visualising Cholesterol in Brain by On-Tissue Derivatisation and Quantitative Mass Spectrometry Imaging | Roberto Angelini, Swansea, UK |
11:10 – 11:30 | Lipidomics meets Data Science: Towards platform-independent Structural Elucidation | Christoph A. Krettler, Graz, Austria |
Sponsor talk | ||
11.30 – 11.50 | A lipidomic mouse brain atlas | Christian Klose, Lipotype GmbH, Dresden, Germany |
LSI Workshop I | ||
14:00 – 16:00 | Current status of guideline discussions; issues to solve | Lipidomics Standards Initiative |
Wednesday, 30th September
Young scientists II selected short presentations (15 min + 5 discussion min) | ||||||||
Time (CEST) | Session | Speaker | ||||||
12:00 – 12.20 | Phospholipid Acyl Chain Diversity Controls the Tissue-Specific Assembly of Mitochondrial Cardiolipins | Jakob Koch, Innsbruck, Austria | ||||||
12:20 – 12:40 | Tracing lipid oxidation by exogenous reactive species – is there a link to gas plasma-assisted blood coagulation? | Johanna Striesow, Greifswald, Germany | ||||||
12:40 – 13.00 | The alkylglycerol monooxygenase deficient mouse: gene structure and physiology | Katharina Lackner, Innsbruck, Austria | ||||||
13:00 – 13:20 | Spatially resolved lipidome profiling of freshwater sentinel species Gammarus fossarum by shotgun lipidomics and mass spectrometry imaging | Tingting Fu, Villeurbanne, France | ||||||
13:20 – 13:40 | Unsaturation Elements and other Modifications of Phospholipids in Bacteria: New Insight from UVPD Mass Spectrometry | Molly Blevins, Austin, USA | ||||||
Break | ||||||||
14:00 – 14:45 | Keynote: Applying Multidimensional Separations and Novel Visualization Techniques for More Confident Lipid Assessments | Erin Baker, Raleigh, USA | ||||||
14:45 – 14:50 | Young scientists lecture award | |||||||
Break | ||||||||
|
Thursday, 1st October
Bioinformatics for Lipidomics – Online Workshop (separate registration required)
This interactive, hands-on course is already fully booked. Please check the registration page for further details.Time (CEST) | Topic | Trainer |
---|---|---|
09:00 – 09:30 | Welcome and Introduction | Nils Hoffmann |
09:30 – 12:00 | Targeted Lipidomics with LipidCreator and Skyline | Nils Hoffmann |
13:00 – 15:00 | Shotgun Lipidomics with PeakStrainer and LipidXplorer | Jacobo Miranda Ackerman |
15:00 – 17:00 | Downstream processing with lxPostman and lipidome comparison with LUX Score | Fadi Al Machot |
Friday, 2nd October – Bioinformatics for Lipidomics – Online Symposium
Time (CEST) | Session | Speaker | Title |
---|---|---|---|
09:00 – 9:10 | Introduction and Welcome | Organizers | Introduction and Welcome |
9:10 – 9:30 | Keynote | Steffen Neumann | The metaRbolomics Toolbox in Bioconductor and beyond |
9:30 – 9:40 | Databases, Ontologies and Online Resources | Alan Bridge | SwissLipids, a knowledge resource for lipid biology |
9:40 – 9:50 | Databases, Ontologies and Online Resources | Valerie O’Donnell | LIPID MAPS |
9:50 – 10:00 | Break | ||
10:00 – 10:10 | Visualization and Exploration | Michelle Hill | An open source software for analysis of lipidomics experiments - lipidr |
10:10 – 10:20 | Visualization and Exploration | Bo Burla | Supervised Data Processing and Quality Control Workflows in MS-based Lipidomics and the R/Shiny toolbox MIDAR |
10:20 – 10:30 | Visualization and Exploration | Dominik Schwudke | Systematic Lipidome Comparisons Applying a Homology Concept |
10:30 – 10:40 | Data Integration and Applications | Nils Hoffmann | FAIR Data Standards and Workflow Interoperability in metabolomics and lipidomics - the mzTab-M data exchange format |
10:40 – 10:50 | Data Integration and Applications | Michael Witting | Lipids, pathways and genome-scale metabolic models – Many gaps to fill… |
10:50 – 11:00 | Data Integration and Applications | Robert Ahrends | Lipidomics Informatics for Life Science |
11:00 – 11:10 | Break | ||
11:10 – 11:20 | Data Integration and Applications | Tim Rose | Embedding lipidomics into the omics landscape |
11:20 – 11:30 | Data Integration and Applications | Dominik Kopczynski | Goslin: A Grammar of Succinct Lipid Nomenclature |
11:30 – 11:40 | Identification and Quantification Tools | Jürgen Hartler | Lipid Data Analyzer: Automated Lipid Species Annotation by Decision Rule Sets |
11:40 – 11:50 | Identification and Quantification Tools | Hiroshi Tsugawa | Elucidating the diversity of lipid structures by computational mass spectrometry |
11:50 – 12:00 | Identification and Quantification Tools | Oliver Alka | DIAMetAlyzer: Automated, false-discovery rate controlled analysis for data-independent acquisition in metabolomics |
12:00 – 13:00 | Lunch Break | ||
13:00 – 13:30 | Keynote | Sebastian Böcker | SIRIUS, CANOPUS and COSMIC: Turning tandem mass spectra into metabolite structure information |
13:30 – 13:40 | Identification and Quantification Tools | Tobias Kind | Lipid identifications with the LipidBlast in-silico MS/MS libraries |
13:40 – 13:50 | Identification and Quantification Tools | Kai Schuhmann | Accurate quantification of molecular lipid species by LipidXte |
13:50 – 14:00 | Identification and Quantification Tools | Ronny Herzog | Developing a GMP-certified lipid identification software |
14:00 – 14:10 | Break | ||
14:10 – 14:20 | Identification and Quantification Tools | Ni Zhixu | From high throughput Lipid profiling to data integration in systems level |
14:20 – 14:30 | Visualization and Exploration | Ansgar Korf | Multidimensional Kendrick Mass Plots: A graphical analysis tool for lipids |
14:30 – 15:00 | Keynote | Christer Ejsing | Functional lipidomics - a molecular perspective on cellular lipid biochemistry |
15:00 – 15:10 | Identification and Quantification Tools | Bing Peng | LipidCreator: A workbench to probe the lipidomic landscape |
15:10 – 15:20 | Identification and Quantification Tools | Laura Goracci | Tailoring bioinformatics tools to research needs: the Lipostar approach |
15:20 – 15:30 | Break | ||
15:30 – 15:40 | Identification and Quantification Tools | Jeremy Koelmel | Millions of Possibilities: The Uncharted Waters of Redox Lipidomics |
15:40 – 15:50 | Identification and Quantification Tools | Douglas McCloskey | SmartPeak |
15:50 – 16:00 | Identification and Quantification Tools | Justin van der Hooft | Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships |
16:00 – 16:10 | Visualization and Exploration | Jennifer Kyle | Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data |
16:10 – 17:00 | Discussion & Conclusion | All | Discussion & Conclusion |